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SOMD Tutorials The set of tutorials below will guide the user to setup up and familiarise themselves with running molecular dynamics simulations using the Sire app somd.

somd is a powerful tool that allows the user to run simple molecular dynamics simulations to more complex relative or absolute free energy calculations.

     

     

     

In future please also refer to the tutorial paper in preparation for the livecomsjournal on the following github page:https://github.com/michellab/SOMD-tutorials

Installation Instructions

If you are having problems with the installation of SOMD as part of the Sire molecular library please read the installation instructions carefully, which can be found here.